There are two methods. The first method involves copying files from the virtual server to the host Windows environment, then from the host Windows environment to the Power/CIS server. This can be done using WinSCP, but it requires two WinSCP instances.
The second method involves copying file from the virtual server to the Power/CIS server. Assuming you want to copy all files in public_html in the virtual server to Power/CIS, this is the command to do it:
cd; scp -r public_html username@power.arc.losrios.edu:~/
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Note that this command overwrites everything on the Power/CIS server with the content in the virtual machine. It does not, however, delete files that exists in Power/CIS that do not exist in the virtual server. But, still, be careful. You can copy individual files using the scp command, too.